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  • ISSN 1674-8301
  • CN 32-1810/R
Liang Chen, Zhongyin Zhou, Huihe Lu, Ye Xie, Gang Li, Jianfei Huang, Dongsheng Zhao. Identification of a LMNA (c.646C > T) variant by whole-exome sequencing in combination with a dilated cardiomyopathy (DCM) related gene filter in a family with familiar DCM[J]. The Journal of Biomedical Research, 2018, 32(4): 314-316. DOI: 10.7555/JBR.32.20180003
Citation: Liang Chen, Zhongyin Zhou, Huihe Lu, Ye Xie, Gang Li, Jianfei Huang, Dongsheng Zhao. Identification of a LMNA (c.646C > T) variant by whole-exome sequencing in combination with a dilated cardiomyopathy (DCM) related gene filter in a family with familiar DCM[J]. The Journal of Biomedical Research, 2018, 32(4): 314-316. DOI: 10.7555/JBR.32.20180003

Identification of a LMNA (c.646C > T) variant by whole-exome sequencing in combination with a dilated cardiomyopathy (DCM) related gene filter in a family with familiar DCM

Funds: 

We are grateful to all the participants and the funds of “the Youth Fund of Nantong Health Bureau 2015”, ID:WQ2015009. There are no competing interests.

More Information
  • Received Date: January 05, 2018
  • Revised Date: April 04, 2018
  • Anesthesia decisions during surgery involve controlling and maintaining a patient's anesthetic depth, blood pressures and heart rate, among many other conditions. This decision process relies on sound experience of estimating the impact of the drug inputs on the patient outcomes. Accurate estimation of such drug impacts is difficult due to several factors[]: typically, an anesthesia drug can affect multiple outcomes; the same drug can have differing impacts on different patients; the impacts can be altered by surgical types, procedures, stages, and patient conditions; drug-to-drug interactions can influence patient outcomes. For anesthesiologists, management of such parameters on daily basis with accuracy and safety significantly depends on training and experience. Based on our increasing knowledge of drug interactions, it is essential to identify measurable relationships between drug administration and corresponding patient outcomes in a more accurate, objective, and reliable format[].

    Advanced information processing technology can be of great value in this pursuit. For instance, mathematical models can be developed and embedded into anesthesia monitoring systems so that in addition to "monitoring" the current status of a patient, they also can provide a prediction of the patient outcomes in the near-future. Artificial intelligence (AI) techniques and machine learning are also highly suitable in this application since they can use real-time observed data to modify models so that the models can become individualized to the specific patient, and the given type and stage of the surgery.

    We report here an effort in developing such a new technology. The core of this technology is a data-based mathematics function model that relates multiple drugs and their interactions to several essential predictive outcomes of surgical patients in the near-future. This predictive capability can then be employed to display the patient's current status along with predictive near-future outcome trajectories. When a drug infusion rate is modified, its estimated impact can be immediately displayed. As a result, if a specifically targeted anesthesia depth or blood pressure level is required, this function can be used to display a computer-assisted "trial" on the system to ensure that the targeted factors can be achieved within required timeframes before the actual drug is administered to the patient.

    It is noted that the importance of outcome prediction has been recognized in many procedures in anesthesiology and several scoring methods were employed, including Surgical Apgar[], Risk Stratification Tools for predicting morbidity and mortality[], and Preoperative Score for predicting postoperative mortality[]. Computer-assisted outcome prediction and decision assistance are more challenging, and have attracted more attention. Trauma resuscitation errors and their corrections were investigated with AI technology[]. General discussions on feasibility of AI technology for automated anesthesia drug delivery were reported[]. These studies have different focuses, use different methods, and report different results in this paper.

    The study was approved by the appropriate Institutional Review Board and written informed consents were obtained from all subjects[]. We selected a patient population between 20 and 70 years of age (n=7), undergoing upper extremity arteria-venous fistula placement or thrombectomy, under intravenous unconscious sedation. Prior to surgery each patient was given 1 mg of Midazolam Ⅳ, taken to the operating room, and equipped with a bispectral (BIS) monitor (Aspect Medical Devices, Inc.), noninvasive blood pressure (BP) cuff, and pulse oximeter. BIS (streamed continuously) and BP (measured every three minutes) data were used in this study. As the interaction between BIS depth and BP are commonly observed patient data in anesthesia administration, we selected these two parameters as a suitable platform to start and to potentially expand to include others such as heart rate, etc. The data from each patient is divided into two time segments with the first time interval a duration of 30%–50% of the entire data collection time. The first segment is used to establish the model, namely determining the model parameters. The second time segment serves as an independent data for validation. The model fitness is evaluated by comparing the data and the model output for the entire time interval.

    The patient was given 1 –2 μg/kg of bolus Ⅳ fentanyl at the beginning of the surgery and a 1 μg/kg bolus during the surgery, if required. The patient started on intravenous propofol pump at a rate of 50 μg/(kg·minute) and titrated as required during the surgery. A BIS sensor was placed on the patient's forehead before administering anesthesia to the patient. The sensor is connected to the BIS monitor, which in turn was connected to a computer to allow continuous recording and saving of the BIS values. A baseline BIS value of at least 90 is recorded before the administration of anesthesia. All measured heart rates and blood pressures values were entered and saved manually into the computer every three minutes and following any bolus administration. The propofol rate, any changes made to the propofol rate, and any propofol or fentanyl bolus given are also transmitted to the computer model. Data from seven patients were recorded. The BIS range from 0 (no or minimal brain activity) to 100 (patient fully awake and aware), is set by the device manufacturer. As a data collection system, the internal BP limits in the computer system is set on a wide range so as not to disturb or affect data entry. Data for each patient were reviewed by an experienced anesthesiologist for any possible anomalies or errors.

    The core function of this new monitoring technology is framed in establishing reliable embedded computer modelling that can directly correlate the drug or procedure inputs to outcomes in a surgery or procedure. The model structure must be capable of capturing the essential features of a patient's response to the drugs in such a manner that it is able to calculate how the past and current drug infusion rates will result in outcome changes in the immediate future. The model must be tunable to fit specific patient parameters into a varied range of surgical procedures. Here the capability of "AI" is used in the broad sense in which the model parameters are learned from data by certain identification or learning algorithms.

    The function modules of this technology are depicted in Fig. 1. The drug infusion data and patient outcomes were measured by the medical devices, and streamed to the computer for processing. The computer model inputs further patient and surgical information to develop short-term predictive outcomes. The display module shows both the current status and predicted outcomes on the screen with both numerical values and graphical trend curves. Fig. 2 is a collaborative display of anesthesia depth (BIS) and blood pressure. The system additionally contains a decision-assistant function module that allows the anesthesiologist to enter planned drug modifications and the system to generate a predicted impact of such changes. Tuning such modifications can allow the anesthesiologist to develop suitable scenarios to have patient outcomes designed to achieve desired target values at specific times.

    Figure 1. The function modules of the integrated predictive anesthesia monitor where drug infusion data and patient outcomes are measured and streamed to the computer for processing.
    Figure  1.  The function modules of the integrated predictive anesthesia monitor where drug infusion data and patient outcomes are measured and streamed to the computer for processing.
    The computer model inputs further patient and surgical information to develop short-term predictive outcomes. The display module shows both the current status and predicted outcomes on the screen with both numerical values and graphical trend curves.
    Figure 2. Graphical illustration on how the integrated predictive anesthesia monitor can collaboratively display anesthesia depth (BIS) and blood pressure (BP).
    Figure  2.  Graphical illustration on how the integrated predictive anesthesia monitor can collaboratively display anesthesia depth (BIS) and blood pressure (BP).

    To make the model account for patient uniqueness, the learning function uses the observed data to tune the model parameters, leading to a data-based learning capability. In our early work[], a specially designed computer monitoring system was developed to record multi-drug-multiple-outcome data. The data observed a clear correlated outcome response to propofol titration, bolus injection and fentanyl injection: the anesthesia drugs lower the patient BIS values, depress blood pressure, and result in higher heart rate fluctuations.

    To capture such dynamic relationships, we are developing an enhanced modelling technique which involves the following function modules: (1) The drug input function module to represent the drug-administering system, injection pathway, and propagation to the blood; (2) The dynamic system module to capture the common feature of initial delay and gradual impact of the drug on outcomes; (3) The multi-output function module to model the impact of the drug on each considered outcome.

    The basic model structure is called a "Wiener Model"[,], which relates an input to an output and contains three generic blocks: time delay, dynamic delay, and sensitivity function. It can be used for different inputs and outputs such as propofol-to-BIS relationship. For each application, the parameters will be different in different patients, which are estimated by data.

    This model structure was further expanded to include multiple inputs and multiple outputs, and called a multi-input-multi-output Hammerstein-Weiner model in engineering. It extends our previous work of using single-input-single-output Wiener models[,] which do not involve the drug input function, to the multi-drug-multi-outcome framework here. By using the simplified but representative dynamics and functions to represent these relationships, we ensure that the model contains only a relatively small set of parameters that can be updated and learned in real time during a surgery.

    Our approach for determining the parameter values is data-based learning and system identification. In our early work[], we used a special identification algorithm to learn model parameters. In this approach, we first use the patient condition and population-based model as the initial parameter values. After the drug administration is performed, the system starts to receive data on the drug infusion and the patient outcomes, which are used to modify the parameter values. The algorithms used to perform this task are called system identification algorithms.

    The distinct advantages and contributions of our approach are in the following aspects: (1) Since simplified dynamic and function models are used, less data is required to update the parameters so that the model can more rapidly capture the salient characteristics of a specific patient, under a specific surgery, at a specific time; (2) By including the drug input functions, our model can capture data from diversified medical devices by multiple manufacturers with multiple differing device features; (3) By including multiple drugs and multiple outcomes in a unified model, we can represent interactions of drugs and their correlated impact on patient outcomes under a unified monitor system.

    In our study, we used a simple-structured dynamic model that mainly captured the drug impact in the following aspects: the effects of drug changes on the BIS and BP, the time delay before the initial visible response, and the response speed of the drug effect on the BIS and BP. Mathematically, this can be written as a three-component cascaded system: a time delay of τ seconds written as eτs, a first-order dynamics of time constant T written as 11+Ts, and a nonlinear sensitivity function f(x) where x is the drug infusion rate. For convenience of implementation, f(x) can be a simple polynomial whose coefficients must be learned from data. Also, each model channel was modeled differently. For example, the channels from the fentanyl bolus injection, the propofol bolus injection, and the propofol titration to the BIS and BP, were collected on separate channels. After selecting the model structure, the data were then used to identify or learn model parameters. The model's usefulness was evaluated by its predictive capability on the measured BIS and BP values.

    As shown in Fig. 3, with recorded data and our system's predicted outcome values, BIS values can be affected by many unknown factors, such as surgery stimulation, and body movement, among many others. The system's capability was reflected by its prediction of the main trend of BIS values as responses to drug administration. The curves showed desirable features of the system. The BP data were collected every three minutes. The curves outline that propofol affected the BP, but with slightly less impact than the fentanyl injection.

    Figure 3. The recorded data and predicted outcome values from the integrated predictive anesthesia monitor system.
    Figure  3.  The recorded data and predicted outcome values from the integrated predictive anesthesia monitor system.

    There have been extensive efforts in studying automated anesthesia administration by using feedback control techniques[]. These population-based models lack the ability of "learning" in real time to generate patient-specific models. The multi-outcome predictive monitoring technique described here is a fundamental improvement on the current anesthesia monitoring technology by providing critical future-impact information, manageable reliability, and useful decision assistance. The main ideas of using mathematics models, signal processing, and individualized management to improve anesthesia care have been used in other related areas of anesthesiology[]. This report highlights a promising approach to addressing several critical requirements for such a new technology: simple and reliable models, data-based and individualized patient outcome monitoring and prediction, and learning capability.

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